Here's a 3-D plot of my South Asian PCA run, showing the first three principal components.
The principal components have been scaled according to their respective eigenvalues. The plot is rotating about the vertical 1st eigenvector.
You can find out your position on the plot by using the dropdown below the plot and selecting your Harappa ID.
My ID is missing
When i want to select it, i cant find it.
This is a South-Asian 3D PCA plot, HRP15.
Anyway, awesome work Zack! The particpants plus all the available reference populations together on one PCA plot makes for great reference.
As I mentioned here, this run includes only those whose ref3 admixture results had more than 50% South Asian + Onge.
Hi Zack. Thanks for reply. Will you make a run on gypsies, to elaborate more on their origins?
Yes, now that I have a few Romany participants, I am going to do a group analysis for them.
Cool. Thanks
Awesome 3 D PCA plot, this is quite a amazing tool. Great job Zack!
Hi Zack. Is it possible to make an option; wherein you can choose multiple participants from the drop down bar to be illustrated on the PCA plot?
And also, the option of removing certain populations from the plot.
I have been thinking about such features. But it will probably take some time.